Campuses

As France's leading biocluster, Genopole is an incubator for cutting-edge projects in biotechnology. Located in the city of Évry, just south of Paris, Genopole provides a unique environment for scientists and entrepreneurs seeking to advance research and innovation.

Discover >

Advantages

Genopole accompanies researchers, postdocs and start-up entrepreneurs through all the phases of their projects to ensure the best possible conditions for business development.

Discover >

Genopole’s citizens

Every day, at Genopole, researchers, entrepreneurs and students cross paths, share ideas and unite forces in a veritable melting pot for innovation.

Discover >

Highlights

Giving wings to research and empowering employment in our community are cornerstones of Genopole's mission. Catch up on recent scientific advances, the accomplishments of our biotech actors and the events that enliven the biocluster.

Discover >

Innovate with us

Discover >
Platforms

Platform MicroScope – Annotation and comparative analyzes of microbial genomes


Genoscope – Laboratoire d’Analyses Bio-informatiques en Génomique et Métabolisme (LABGeM)
Genopole Campus 2
2 Rue Gaston Crémieux
91000 EVRY-COURCOURONNES

Email : mage@genoscope.cns.fr

Scientific Manager : MEDIGUE Claudine, David VALLENET
Technical Manager : Mathieu DUBOIS
Web Site >
Plateforme MicroScope - Plateforme MicroScope -

#Software Platform #IT and Bioinformatics

  • Bioinformatics platform
  • Bacterial genome annotation
  • Functional annotation
  • Comparative analysis of bacterial genomes
  • Bacterial metabolism
  • Metabolic networks Structure d’accueil

Host:
CEA-Genoscope / UMR 8030 Laboratoire d’Analyses Bio-informatiques en Génomique et Métabolisme (LABGeM)

Supervisors:
The platform is integrated with the metabolic Genomic UMR (UMR 8030) whose supervisors are CEA, the CNRS and the University of Evry – Paris-Saclay.

The platform is integrated with national infrastructures in life sciences France Génomique and Institut Français de Bio-informatique. The platform is also integrated with the European ELIXIR infrastructure.

Certification

ISO 9001 & NFX50-900LABGeM received ISO 9001:2008 and NF-X 50-900 certifications for its research, development and services activities via the MicroScope platform.

 

 

Field of activity


The MicroScope platform is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.

Activities

  • Development of tools for the annotation and comparative analysis of bacterial genomes and metabolism.
  • Organization and management of genomic and metabolic data in database structures.
  • Prediction and analysis of bacterial genome metabolic networks and models.
  • NGS data analysis: projects in evolution (polymorphisms) and transcriptomics (RNA-seq).
  • Development of user-friendly Web interfaces for the use of expert analysis and annotation tools (MaGe, Magnifying Genomes).
  • An internationally-scaled genomics data analysis service for the microbiology community.
  • Training for annotation, genomic and metabolic comparative analysis and transcriptome data analysis with the MaGe interface.

Equipments

  • Locally, the MicroScope platform is mutualized within the IT infrastructure of Genoscope: 700 processor cores/1 petaoctet of storage.
  • Access to the CEA supercomputing center located in Bruyères-le-Châtel (CCRT): 4000 processor cores and 5 petaoctets of storage made available for the France Génomique national network of platforms.

Access & services

>> Follow this link for information on the platform and access it

Training

The LABGeM offers to MicroScope users regular training sessions organized in collaboration with Evry University:

  • “Annotation and analysis of prokaryotic genomes using the MicroScope platform”: this 4.5 days training course is aimed at presenting the functionalities of the Microscope platform to the new users. It includes 1 day fully dedicated to bacterial metabolism analyses, exploration and annotation. This training is proposed twice a year in spring and autumn.
  • “MicroScope platform – Advanced course”: this 2 days training course is aimed at presenting the last developments of the MicroScope platform to users who have followed a MicroScope training a few years ago. It is proposed once a year.

>> More informations on LABGem Web Site

Partager
Genopole’s Platforms

#IT and Bioinformatics


In Same Field

REVE - Infrastructure Genopole

High-Speed Network – REVE

REVE links 14 scientific sites in the Grand Paris Sud Urban Area and is available to companies based on the Évry-Corbeil biocluster. It provides rapid access to genetics and genomics data. A private telecom network in Évry.

Discover
Ibisc - Genopole's Laboratory

Platform EVRYRNA

The Evrynna platform is a web server providing various algorithms and bio-computing tools developed in the UEVE / Genopole Ibisc laboratory, and dedicated to the prediction and analysis of non-coding RNAs (CRMA).

Discover
Ibisc - Genopole's Laboratory

EVR@ Platform

Platform dedicated to virtual reality, the creation of collaborative, immersive interfaces …

Discover
Phinc dévelopment - entreprise génopolitaine

PBPK Modeling Platform

Computerized pharmacokineticpharmacodynamic modeling and simulation platform for the optimization of drug development during lead identification, preclinical testing and phase I and IIa trials.

Discover
SABNP - Genopole's laboratory

Structural Biology Platform

The platform has the equipment, infrastructure and expertise necessary for the structural study of cells and biomolecules

Discover
occigen - plateforme genopolitaine

Imaging & Cytometry Platform – OCCIGEN

Expertise and tools for molecular and physiopathological exploration, from the single cell to the entire living organism via imaging and flow cytometry techniques.

Discover
View all >
With support