EN

Campuses

As France's leading biocluster, Genopole is an incubator for cutting-edge projects in biotechnology. Located in the city of Évry, just south of Paris, Genopole provides a unique environment for scientists and entrepreneurs seeking to advance research and innovation.

Discover >

Campus life

Discover the campuses

Advantages

Genopole accompanies researchers, postdocs and start-up entrepreneurs through all the phases of their projects to ensure the best possible conditions for business development.

Discover >

Join our programs

Shaker Gene.iO ATIGE

Genopole’s citizens

Every day, at Genopole, researchers, entrepreneurs and students cross paths, share ideas and unite forces in a veritable melting pot for innovation.

Discover >

Directories Our network

Highlights

Giving wings to research and empowering employment in our community are cornerstones of Genopole's mission. Catch up on recent scientific advances, the accomplishments of our biotech actors and the events that enliven the biocluster.

Discover >

Come to our events

Innovate with us

Discover >

Quick access

Platforms

Platform EVRYRNA : Algorithms and software for the identification of RNAs

Institut de Biologie Génétique et Bio-informatique (IBGBI)
23, boulevard de France
91037 EVRY Cedex – France

Email : fariza.tahi@ibisc.univ-evry.fr

Scientific Manager: TAHI Fariza
Web Site >

Structure d’accueil

IBISC – Computer Science, Bio-Informatics and Complex Systems EA 4526

#Software Platform #IT and Bioinformatics

  • Non-coding RNA
  • Secondary structure prediction
  • MicroRNA prediction
  • Large-scale research
  • piRNA prediction

Field of activity

– Prediction of non-coding RNA secondary structures.
– Large-scale identification and prediction of non-coding RNA genomic sequences, particularly small RNAs (microRNA, piRNA, etc.).

ÉvryRNA is a web server that provides the scientific community with access to the range of non-coding RNA predictive tools and algorithms developed by Ibisc :

  • Algorithms for the prediction of RNA secondary structures, including pseudoknots: P-DCFold (Tahi et al., IJAIT 2005), SSCA (Engelen and Tahi, BMC Bioinformatics 2007) and Tfold (Engelen and Tahi, NAR 2010),
  • Algorithms for ab initio prediction of microRNAs: miRNAFold (Tempel and Tahi, NAR 2012), miBoostSVM (Tran et al., RNA 2015) and ncRNAclassifier (Tempel et al., BMC Bioinformatics 2012),
  • Algorithms for the prediction of piwi-interacting RNAs (piRNA): piRPred (Brayet et al., Bioinformatics 2014).

Software

  • P-DCFold, for the prediction of RNA secondary structures, including pseudoknots.
  • SSCA, for the selection of homologous sequences in a comparative approach to predicting RNA secondary structures.
  • Tfold, for the prediction of secondary structures, including pseudoknots (integration of SSCA and P-DCFold).
  • miRNAFold, for ab initio large-scale research of microRNA precursors (pre-miRNAs) in genomes.
  • ncRNAclassifier, to determine if a non-coding RNA is derived from a transposable element (TE) or confused with a TE.
  • miRBoost, to identify true or false pre-miRNA sequences.
  • piRPred : for piRNA prediction.
  • IpiRId: software for integrative piRNA prediction.

Complementary tools

  • RNA-SC: for the comparison of predicted RNA secondary structures to reference structures.

Access

For more information, contact Fariza Tahi – fariza.tahi@ibisc.univ-evry.fr
Phone. : +33 6 10 44 21 22

Share
Genopole’s Platforms

#IT and Bioinformatics

In same field

REVE - Infrastructure Genopole

High-Speed Network – REVE

REVE links 14 scientific sites in the Grand Paris Sud Urban Area and is available to companies based on the Évry-Corbeil biocluster. It provides rapid access to genetics and genomics data. A private telecom network in Évry.

Discover
CCI Essonne - Structure d'accueil Plateau technique

Technical Facility of Genopole Enterprises-Essonne CCI incubator

Support for biotech start-ups via the provision of a comprehensive range of specific services and biomedical/healthcare research equipment.

Discover
Plateforme MicroScope -

MicroScope

The MicroScope platform is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.

Discover
Ibisc - Genopole's Laboratory

EVR@ Platform

Platform dedicated to virtual reality, the creation of collaborative, immersive interfaces …

Discover
Lambe - Genopole's laboratory

Mass Spectrometry Platform

Development of analysis methods via mass spectrometry and liquid chromatography-mass spectrometry (LC-MS)

Discover
Mines Paris Tech - Evry Plateforme microscopie électronique

Electron Microscopy Platform

Platform dedicated to electron microscopy in the fields of cell and tissue biology and material physics

Discover
SABNP - Genopole's laboratory

Structural Biology Platform

The platform has the equipment, infrastructure and expertise necessary for the structural study of cells and biomolecules

Discover
Plateforme d'irradiation expérimentale - Genopole

Experimental Irradiation Platform

The platform has the equipment, infrastructure and expertise necessary for the experimental exposure (irradiation) of biological and non-biological material to radiation.

Discover
occigen - plateforme genopolitaine

Imaging & Cytometry Platform – OCCIGEN

Expertise and tools for molecular and physiopathological exploration, from the single cell to the entire living organism via imaging and flow cytometry techniques.

Discover
Généthon - Genopole's Laboratory

DNA and Cell Bank

Processing and storage of human blood samples (serum, DNA, lymphocytes and lymphoblastoid B cell lines) and biopsy samples (primary cultures – mainly myoblasts and fibroblasts) for research in rare diseases.

Discover
Plateforme histologie - anatomocytopahologie

Anatomopathological & Histological Platform

Anatomopathological & histological Platform offers complementary technologies and competencies to cover all cytology/ histology steps, including tissue preparation (cryopreservation, paraffin/resin embedding), histological staining and immunohistochemical staining, and microscopic assessment via photonic and electronic imaging.

Discover
CERFE - Genopole's Platform

CERFE

Experimental Functional Research Exploration Center – Cell Biology – Microscopy

Discover
View all >
With the support from
Région île de France
Ministère de l'Enseignement supérieur et de la recherche AFM-Téléthon
Communauté d'agglomération Grand Paris Sud
Département de l'Essonne - Terre D'avenirs Ville d'Evry-Courcouronnes 2023 CEA Inserm Centre hospitalier Sud Francilien Université d'Evry - Paris Saclay Université PAris-Saclay SEM Genopole

Keep up to date with Genopole’s latest events and news