Platforms

Platform EVRYRNA : Algorithms and software for the identification of RNAs

Institut de Biologie Génétique et Bio-informatique (IBGBI)
23, boulevard de France
91037 EVRY Cedex – France

Email : fariza.tahi@ibisc.univ-evry.fr

Scientific Manager: TAHI Fariza

Web Site >

Structure d’accueil

IBISC – Computer Science, Bio-Informatics and Complex Systems EA 4526

#Software Platform #IT and Bioinformatics

Non-coding RNA
Secondary structure prediction
MicroRNA prediction
Large-scale research
piRNA prediction

Field of activity

– Prediction of non-coding RNA secondary structures.
– Large-scale identification and prediction of non-coding RNA genomic sequences, particularly small RNAs (microRNA, piRNA, etc.).

ÉvryRNA is a web server that provides the scientific community with access to the range of non-coding RNA predictive tools and algorithms developed by Ibisc :

Algorithms for the prediction of RNA secondary structures, including pseudoknots: P-DCFold (Tahi et al., IJAIT 2005), SSCA (Engelen and Tahi, BMC Bioinformatics 2007) and Tfold (Engelen and Tahi, NAR 2010),
Algorithms for ab initio prediction of microRNAs: miRNAFold (Tempel and Tahi, NAR 2012), miBoostSVM (Tran et al., RNA 2015) and ncRNAclassifier (Tempel et al., BMC Bioinformatics 2012),
Algorithms for the prediction of piwi-interacting RNAs (piRNA): piRPred (Brayet et al., Bioinformatics 2014).

Software

P-DCFold, for the prediction of RNA secondary structures, including pseudoknots.
SSCA, for the selection of homologous sequences in a comparative approach to predicting RNA secondary structures.
Tfold, for the prediction of secondary structures, including pseudoknots (integration of SSCA and P-DCFold).
miRNAFold, for ab initio large-scale research of microRNA precursors (pre-miRNAs) in genomes.
ncRNAclassifier, to determine if a non-coding RNA is derived from a transposable element (TE) or confused with a TE.
miRBoost, to identify true or false pre-miRNA sequences.
piRPred : for piRNA prediction.
IpiRId: software for integrative piRNA prediction.

Complementary tools

RNA-SC: for the comparison of predicted RNA secondary structures to reference structures.

Access

For more information, contact Fariza Tahi – fariza.tahi@ibisc.univ-evry.fr
Phone. : +33 6 10 44 21 22

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